Alternate title

FR004100

Date (Publication)

2020-12-31T12:00:00

Citation identifier

Zostera marina habitat suitability along French Coast in Bay of Biscay and Channel Sea

Citation identifier

DOI:10.12770/f39a2450-6b86-4093-9e32-4023957cbcb4

Presentation form

Digital map

Credit

Ifremer - Unité Dynamiques des Écosystèmes Côtiers

Status

Completed

Point of contact

Organisation name	Individual name	Electronic mail address	Role
Ifremer	Romain Mouillard	Romain.Mouillard@ifremer.fr	Author
Ifremer	Martin Marzloff	Martin.Marzloff@ifremer.fr	Author
Ifremer	Mickaël Vasquez	Mickael.Vasquez@ifremer.fr	Author
Ifremer		sismer@ifremer.fr	Publisher

GEMET - INSPIRE themes, version 1.0

• Habitats and biotopes

Theme

• Zostera marina

• Marha

Discipline

• SDM

• HSM

• Habitat suitability modeled map

Place

• Bay of Biscay

• Channel Sea

Cadre Réglementaire - SIMM

• Marine Strategy Framework Directive (MSFD)

Sous-regions marines

• /Metropolitan France/Bay of Biscay

• /Metropolitan France/Channel-North Sea

• /Metropolitan France/Celtic Seas

Thématiques - SIMM

• /Environmental Status/Habitats

• Research

Access constraints

Other restrictions

Other constraints

no limitations to public access

Use limitation

Product under creative common license CC BY-NC-SA: https://creativecommons.org/licenses/by-nc-sa/4.0/

Use limitation

Citation in bibliography should be as follows: Romain Mouillard, Martin Marzloff, Mickaël Vasquez (2020). Zostera marina habitat suitability along French Coast in Bay of Biscay and Channel Sea. Ifremer. https://doi.org/10.12770/f39a2450-6b86-4093-9e32-4023957cbcb4

Spatial representation type

Grid

Distance

0.004501612  degrees

Language

English

Character set

UTF8

Topic category

• Oceans
• Biota

Begin date

2021-01-01T12:00:00Z

End date

2021-01-01T12:00:00Z

Reference system identifier

EPSG / 4326

OnLine resource

Protocol	Linkage	Name
WWW:LINK	https://archimer.ifremer.fr/doc/00667/77870/	MSc thesis: Mouillard Romain (2020). Modélisation statistique de la distribution spatiale des espèces Zostera marina et Zostera noltei à l'échelle de la façade Manche-Atlantique. Mémoire de fin d’études d’Ingénieur Agronome, spécialité « Sciences halieutiques et aquacoles » préparée à Agrocampus Ouest. Option « Ressources et Ecosystèmes Aquatiques ».
WWW:LINK-1.0-http--metadata-URL	https://doi.org/10.12770/f39a2450-6b86-4093-9e32-4023957cbcb4	DOI of the dataset

OnLine resource

Protocol	Linkage	Name
OGC:WMS	https://sextant.ifremer.fr/services/wms/biologie?	IFR_ZOSTERA_MARINA_HABITAT_SUITABILITY
COPYFILE		IFR_ZOSTERA_MARINA_HABITAT_SUITABILITY

OnLine resource

Protocol	Linkage	Name
OGC:WMS	https://sextant.ifremer.fr/services/wms/biologie?	IFR_ZOSTERA_MARINA_HABITAT_SUITABILITY_SD
COPYFILE		IFR_ZOSTERA_MARINA_HABITAT_SUITABILITY_SD

OnLine resource

Protocol	Linkage	Name
OGC:WMS	https://sextant.ifremer.fr/services/wms/biologie?	IFR_ZOSTERA_MARINA_BINARY_HABITAT_SUITABILITY
FILE		IFR_ZOSTERA_MARINA_BINARY_HABITAT_SUITABILITY

Hierarchy level

Dataset

Statement

Bathymetry, KdPar, sea surface temperature, fetch, current velocity and other variables were used as predictors. Random forest models were fitted and evaluated using N=393 Zostera marina presence-only data. 10 sets of N pseudo-absences were randomly drawn to consolidate 10 alternative presence/pseudo-absence datasets. 79 occurrences (20% of N) and 79 pseudo-absence were set aside for independent model validation. To capture results sensitivity to pseudo-absences, 10 Random Forest models were fitted on each dataset. Coastwide extensive rasters of the predictors were used to predict habitat suitability along the French Atlantic and English Channel coastline using each model. An Ensemble modelling approach was used to produce a single mean habitat suitability estimate using a weighted mean across individual model predictions based on goodness-of-fit as assessed by the Area Under the receiver-operating Curve (AUC). Standard deviation around the mean habitat suitability index corresponds to the standard deviation across the 10 model estimates. Habitat suitability estimates were classified into binary 0/1 predictions according to model-specific threshold using the validation dataset and the specificity=sensitivity optimisation criteria. The dominant mode across the ten model binary estimates is presented in the binary habitat suitability index raster. In a final step, as Zostera marina cannot settle on hard bottoms, rock polygons from EMODnet Geology’s seabed substrate product were used to post-process the raster products as follows: in cells where rock is present, the two habitat suitability indices were set to 0, and the standard deviation set to NA.

Presence records: Zostera marina occurrence datasets were collated across a range of local studies completed by different organisations (e.g. Ifremer, French Office of Biodiversity, Marine Nature Parks, universities) in the context of different ecological monitoring initiatives (Natura 2000 network, OSPAR, CARTHAM project, REBENT network etc.). All observations (surface and point) regardless of the sampling technique (e.g. aerial photos, diving etc.) were considered over the recent period, i.e. 2000 to 2016 (older records were discarded).

Environmental variables: eight covariates were used to fit the Random Forest models as described below.

-depth: EMODnet Bathymetry 100m DTM

-KdPAR (diffuse attenuation coefficient of downwelling photosynthetically available radiation, proxy of water transparency): EMODnet Seabed Habitat data product, spatial resolution 250m, averaged values (temporal coverage 5 years -2005-2009, temporal resolution 1 day)

-PAR (photosynthetically active radiation): EMODnet Seabed Habitat data product, spatial resolution 4000m, averaged values (temporal coverage 5 years -2005-2009, temporal resolution 1 day)

-Fetch: Burrows Wave fetch GIS layers for Europe, spatial resolution 100m ( https://doi.org/10.6084/m9.figshare.8668127 )

-Chlorophyll-a, phosphate, nitrate, dissolved oxygen: Ifremer MARC archive, spatial resolution 4000m, averaged values (temporal coverage 7 years -2012-2018, temporal resolution 1 day)

-air temperature: Arome – Météo France archive, spatial resolution 1000m, averaged values (temporal coverage 7 years -2012-2018, temporal resolution 1 hour)

-Tidal current velocity, water temperature, salinity: Ifremer MARC archive, spatial resolution 500m, averaged values (temporal coverage 6 years, 2010-2015, temporal resolution 1 hour)

-Wave energy: Ifremer Homère archive, spatial resolution 300m, Percentile 90th values (temporal coverage 6 years, 2010-2015, temporal resolution 1 hour)

Metadata

File identifier

f39a2450-6b86-4093-9e32-4023957cbcb4 XML

Metadata language

English

Character set

UTF8

Hierarchy level

Dataset

Date stamp

2024-01-24T16:16:19.597Z

Metadata standard name

ISO 19115:2003/19139 - SEXTANT

Metadata standard version

1.0

Metadata author

Organisation name	Individual name	Electronic mail address	Role
Ifremer	Mickaël Vasquez	Mickael.Vasquez@ifremer.fr	Point of contact

Other language

Language	Character encoding
French	UTF8
English	UTF8